HsaEX6062888 @ hg19
Exon Skipping
Gene
ENSG00000106852 | LHX6
Description
LIM homeobox 6 [Source:HGNC Symbol;Acc:21735]
Coordinates
chr9:124971893-124976348:-
Coord C1 exon
chr9:124976253-124976348
Coord A exon
chr9:124975885-124976059
Coord C2 exon
chr9:124971893-124971996
Length
175 bp
Sequences
Splice sites
3' ss Seq
TGCCGAGGCTGTCGTTCCAGGTG
3' ss Score
5.71
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
Exon sequences
Seq C1 exon
GTTATGCAGGCGCAGTTCGCGCAGGACAACAACCCCGACGCTCAGACGCTGCAGAAGCTGGCGGACATGACGGGCCTCAGCCGGAGAGTCATCCAG
Seq A exon
GTGTGGTTTCAAAACTGCCGGGCGCGTCATAAAAAGCACACGCCGCAACACCCAGTGCCGCCCTCGGGGGCGCCCCCGTCCCGCCTTCCCTCCGCCCTGTCCGACGACATCCACTACACCCCGTTCAGCAGCCCCGAGCGGGCGCGCATGGTCACCCTGCACGGCTACATTGAGA
Seq C2 exon
GTCAGGTACAGTGCGGGCAGGTGCACTGCCGGCTGCCTTACACCGCACCCCCCGTCCACCTCAAAGCCGATATGGATGGGCCGCTCTCCAACCGGGGTGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000106852-'6-10,'6-9,7-10=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.594 A=0.619 C2=0.200
Domain overlap (PFAM):
C1:
PF0004624=Homeobox=FE(54.4=100)
A:
PF0004624=Homeobox=PD(19.3=18.6)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTTCGCGCAGGACAACAA
R:
CTTCTCACCCCGGTTGGAGAG
Band lengths:
188-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)