RnoEX0049900 @ rn6
Exon Skipping
Gene
ENSRNOG00000005996 | Lhx6
Description
LIM homeobox 6 [Source:RGD Symbol;Acc:1306174]
Coordinates
chr3:15411939-15419488:-
Coord C1 exon
chr3:15419393-15419488
Coord A exon
chr3:15419035-15419209
Coord C2 exon
chr3:15411939-15411959
Length
175 bp
Sequences
Splice sites
3' ss Seq
TGCAGAGACTGTCGTTCCAGGTG
3' ss Score
3.18
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
Exon sequences
Seq C1 exon
GTTATGCAGGCTCAGTTCGCGCAGGACAACAACCCCGACGCGCAGACGCTGCAGAAGCTAGCGGACATGACGGGCCTCAGTCGCAGGGTCATCCAG
Seq A exon
GTGTGGTTTCAAAACTGCCGAGCGCGTCATAAAAAGCATACACCGCAGCACCCAGTGCCGCCCTCTGGGGCACCCCCGTCCCGCCTCCCCTCCTCCCTGTCCGACGACATCCACTATTCTCCGTTCAGCAGCCCAGAGCGGGCACGCATGGTCACCTTGCACGGCTACATCGAGA
Seq C2 exon
GTCATCCTTTTTCAGTACTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005996_MULTIEX1-1/2=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.594 A=0.610 C2=0.000
Domain overlap (PFAM):
C1:
PF0004624=Homeobox=FE(54.4=100)
A:
PF0004624=Homeobox=PD(19.3=18.6)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]