HsaEX6063085 @ hg19
Exon Skipping
Gene
ENSG00000196152 | ZNF79
Description
zinc finger protein 79 [Source:HGNC Symbol;Acc:13153]
Coordinates
chr9:130191111-130198282:+
Coord C1 exon
chr9:130191111-130191199
Coord A exon
chr9:130197369-130197495
Coord C2 exon
chr9:130198187-130198282
Length
127 bp
Sequences
Splice sites
3' ss Seq
AAATGTGCTTGTTTTTTCAGGGA
3' ss Score
9.55
5' ss Seq
TAGGTAAGG
5' ss Score
9.31
Exon sequences
Seq C1 exon
TACTGCCTTCCCCAGGCCCTGCCCTTCCCCAAGAGGAAAACACAGGAGAGGAAGGAATGGCTGCTGGTCTCCTCACAGCTGGGCCCCGG
Seq A exon
GGATCCACATTCTTCAGCAGTGTGACGGTAGCTTTTGCACAGGAAAGGTGGAGGTGCCTCGTGTCTACTCCACGGGACAGGTTCAAGGAGGGGATACCAGGAAAGTCCAGGAGCCTTGTCCTACTAG
Seq C2 exon
GACTTCCAGTTTCCCAGCCTGGCATGAACTCCCAGTTGGAACAAAGGGAAGGCGCATGGATGCTGGAGGGCGAAGACCTGCGAAGTCCCTCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196152-'3-4,'3-3,5-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.950 A=0.186 C2=0.818
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=93.0)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCTGCCCTTCCCCAAG
R:
CTGGAGAGGGACTTCGCAGG
Band lengths:
170-297
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)