BtaEX0041546 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000023885 | ZNF79
Description
zinc finger protein 79 [Source:HGNC Symbol;Acc:HGNC:13153]
Coordinates
chr11:98181625-98184446:+
Coord C1 exon
chr11:98181625-98181713
Coord A exon
chr11:98183701-98183827
Coord C2 exon
chr11:98184351-98184446
Length
127 bp
Sequences
Splice sites
3' ss Seq
CACTGTGTTTGTTCTTTCAGGGA
3' ss Score
11.5
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
Exon sequences
Seq C1 exon
AACCACCTTCTCCAGACCCTGCCCTTCTCCAAGAGGAAGACACAGAGGAGGAAGGAATGGCAGCTGGTCTCCTCACAGCAGGGCCCCAA
Seq A exon
GGATCCACACCTTTCAGCAATGTGACTGTAGATTTTACCCAGGGGGGATGGAGGCAGTTGGCCCCTGCTCCGAGGGACAGGTTCGAGGAAGGGATGCCAGAAAATTCCAGAAACCTGGTCTTACTGG
Seq C2 exon
GACTTCCAGTGTCCCAACCTGGTATGAACTCCCAGTTGGAACAAAGGGAAGGTTCATGGATGCTCGAGAGAGACGGCCTAAGGAACGCCTGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000023885_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.814 C2=0.682
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=93.0)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACCACCTTCTCCAGACCCTG
R:
CTGGACAGGCGTTCCTTAGG
Band lengths:
185-312
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development