MmuEX6085199 @ mm10
Exon Skipping
Gene
ENSMUSG00000044807 | Zfp354c
Description
zinc finger protein 354C [Source:MGI Symbol;Acc:MGI:1353621]
Coordinates
chr11:50817119-50826510:-
Coord C1 exon
chr11:50826426-50826510
Coord A exon
chr11:50817809-50817935
Coord C2 exon
chr11:50817119-50817211
Length
127 bp
Sequences
Splice sites
3' ss Seq
GAATGGGTTTGCTGTTCCAGGAG
3' ss Score
6.52
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
Exon sequences
Seq C1 exon
GCATATTTGGTCAGCACTCGGCTCTCCTTTGGCAGAAAAACTAAGAAGGGAAATGGCTGTGGATTTGCTGGCTGCCCGAGGCACA
Seq A exon
GAGCCTGTGACCTTCAGGGATGTGGCCGTGTCCTTCAGCCAGGATGAGTGGTTGCACCTGGACCCTGCTCAGAGAAGCCTGTACCGAGAGGTGATGCTGGAGAACTACAGCAACCTGGCCTCGCTGG
Seq C2 exon
GGTTTCAGGCTTCAATACCTCCTGTGATTGGCAAGCTGCAAAAAGGGCAAGATCCCTGCATGGAAAGAGAAGCCCCTGAAGACACCTGCCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000044807-'5-14,'5-9,10-14
Average complexity
C1
Mappability confidence:
92%=100=80%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.406
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATATTTGGTCAGCACTCGG
R:
CTAGGCAGGTGTCTTCAGGGG
Band lengths:
178-305
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types