HsaEX6101531 @ hg19
Exon Skipping
Gene
ENSG00000177932 | ZNF354C
Description
zinc finger protein 354C [Source:HGNC Symbol;Acc:16736]
Coordinates
chr5:178489016-178504167:+
Coord C1 exon
chr5:178489016-178489096
Coord A exon
chr5:178503446-178503572
Coord C2 exon
chr5:178504072-178504167
Length
127 bp
Sequences
Splice sites
3' ss Seq
GTATGGGTTTGCCATTACAGGAG
3' ss Score
5.8
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
Exon sequences
Seq C1 exon
ACCCACCGTGTCCACACTCTGCTCTCCCTGGGCAGGAAGACTGAGGAGGAAGGGATGGCTGTGGATCTGCTGTCTGCTCAG
Seq A exon
GAGCCTGTGACATTCAGGGATGTGGCCGTGTTCTTCAGCCAGGACGAGTGGTTGCACCTGGACTCTGCCCAGAGGGCCTTGTACCGGGAGGTGATGCTGGAGAACTACAGCAGCCTGGTCTCACTGG
Seq C2 exon
GGATTCCATTTTCAATGCCAAAGTTGATTCATCAGTTGCAGCAAGGAGAAGATCCCTGCATGGTGGAAAGAGAAGTCCCTTCAGATACCCGTCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000177932-'1-3,'1-1,2-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.303
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTCCACACTCTGCTCTCCC
R:
CTAGACGGGTATCTGAAGGGAC
Band lengths:
170-297
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)