HsaEX6101531 @ hg38
Exon Skipping
Gene
ENSG00000177932 | ZNF354C
Description
zinc finger protein 354C [Source:HGNC Symbol;Acc:HGNC:16736]
Coordinates
chr5:179062015-179077166:+
Coord C1 exon
chr5:179062015-179062095
Coord A exon
chr5:179076445-179076571
Coord C2 exon
chr5:179077071-179077166
Length
127 bp
Sequences
Splice sites
3' ss Seq
GTATGGGTTTGCCATTACAGGAG
3' ss Score
5.8
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
Exon sequences
Seq C1 exon
ACCCACCGTGTCCACACTCTGCTCTCCCTGGGCAGGAAGACTGAGGAGGAAGGGATGGCTGTGGATCTGCTGTCTGCTCAG
Seq A exon
GAGCCTGTGACATTCAGGGATGTGGCCGTGTTCTTCAGCCAGGACGAGTGGTTGCACCTGGACTCTGCCCAGAGGGCCTTGTACCGGGAGGTGATGCTGGAGAACTACAGCAGCCTGGTCTCACTGG
Seq C2 exon
GGATTCCATTTTCAATGCCAAAGTTGATTCATCAGTTGCAGCAAGGAGAAGATCCCTGCATGGTGGAAAGAGAAGTCCCTTCAGATACCCGTCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000177932-'2-7,'2-4,5-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.303
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTCCACACTCTGCTCTCCC
R:
CTAGACGGGTATCTGAAGGGAC
Band lengths:
170-297
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains