RnoEX0101296 @ rn6
Exon Skipping
Gene
ENSRNOG00000029205 | Zfp354c
Description
zinc finger protein 354C [Source:RGD Symbol;Acc:69405]
Coordinates
chr10:36313860-36322356:-
Coord C1 exon
chr10:36322324-36322356
Coord A exon
chr10:36314467-36314593
Coord C2 exon
chr10:36313860-36313952
Length
127 bp
Sequences
Splice sites
3' ss Seq
GAATGGGTTTGCTGTTCCAGGAG
3' ss Score
6.52
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
Exon sequences
Seq C1 exon
ATGGCTGTGGATTTGCTGGCTGCTCGAGGGACG
Seq A exon
GAGCCTGTGACGTTCAGGGACGTCGCTGTGTCCTTCAGCCAGGATGAGTGGCTGCATCTGGACCCTGCTCAGAGAACCCTGTACCGAGAGGTGATGCTGGAGAACTACAGCAACCTGGCCTCGCTGG
Seq C2 exon
GGTTTCAGGCTTCCATACCTCCCGTGATTGGCAAGCTGCAGAAAGGGCAAGACCCTTGCATGGAAAGAGAAGCCCCGGAAGACACCTGCCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029205_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.085 C2=0.583
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGGATTTGCTGGCTGCTC
R:
CTAGGCAGGTGTCTTCCGGG
Band lengths:
122-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]