HsaEX6065137 @ hg38
Exon Skipping
Gene
ENSG00000172322 | CLEC12A
Description
C-type lectin domain family 12 member A [Source:HGNC Symbol;Acc:HGNC:31713]
Coordinates
chr12:9980582-9985595:+
Coord C1 exon
chr12:9980582-9980733
Coord A exon
chr12:9982020-9982129
Coord C2 exon
chr12:9984870-9985595
Length
110 bp
Sequences
Splice sites
3' ss Seq
ACTATCTGTATTTCCTGTAGGAA
3' ss Score
10.45
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
AGCACAAATGTAAGCCTTGTCCAAGGAGATGGATTTGGCATAAGGACAGCTGTTATTTCCTAAGTGATGATGTCCAAACATGGCAGGAGAGTAAAATGGCCTGTGCTGCTCAGAATGCCAGCCTGTTGAAGATAAACAACAAAAATGCATTG
Seq A exon
GAATTTATAAAATCCCAGAGTAGATCATATGACTATTGGCTGGGATTATCTCCTGAAGAAGATTCCACTCGTGGTATGAGAGTGGATAATATAATCAACTCCTCTGCCTG
Seq C2 exon
GGTTATAAGAAACGCACCTGACTTAAATAACATGTATTGTGGATATATAAATAGACTATATGTTCAATATTATCACTGCACTTATAAAAAAAGAATGATATGTGAGAAGATGGCCAATCCAGTGCAGCTTGGTTCTACATATTTTAGGGAGGCATGAGGCATCAATCAAATACATTTAAGGAGTGTAGGGGGTGGGGGTTCTAGGCTATAGGTAAATTTAAATATTTTCTGGTTGACAATTAGTTGAGTTTGTCTGAAGACCTGGGATTTTATCATGCAGATGAAACATCCAGGTAGCAAGCTTCAGAGAGAATAGACTGTGAATGTTAATGCCAGAGAGGTATAATGAAGCATGTCCCACCTCCCACTTTCCATCATGGCCTGAACCCTGGAGGAAGAGGAAGTCCATTCAGATAGTTGTGGGGGGCCTTCGAATTTTCATTTTCATTTACGTTCTTCCCCTTCTGGCCAAGATTTGCCAGAGGCAACATCAAAAACCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000172322-'10-17,'10-13,12-17=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.014 C2=0.000
Domain overlap (PFAM):
C1:
PF083915=Ly49=PD(17.9=39.2),PF054737=Herpes_UL45=FE(82.0=100)
A:
PF0005916=Lectin_C=FE(35.6=100)
C2:
PF0005916=Lectin_C=PD(35.6=67.9)
Main Skipping Isoform:
ENST00000355690fB12470
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCAAACATGGCAGGAGAGT
R:
TGATGCCTCATGCCTCCCTAA
Band lengths:
245-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains