MmuEX0011629 @ mm10
Exon Skipping
Gene
ENSMUSG00000053063 | Clec12a
Description
C-type lectin domain family 12, member a [Source:MGI Symbol;Acc:MGI:3040968]
Coordinates
chr6:129354477-129365303:+
Coord C1 exon
chr6:129354477-129354628
Coord A exon
chr6:129359408-129359511
Coord C2 exon
chr6:129363894-129365303
Length
104 bp
Sequences
Splice sites
3' ss Seq
GGCTATTTCTGTTTCTGTAGGAA
3' ss Score
8.41
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
Exon sequences
Seq C1 exon
AGCACAAATGTAAACCATGTCCAAAGGGTTCAGAATGGTACAAGGACAGCTGTTATTCTCAACTCAATCAGTATGGAACATGGCAAGAGAGTGTCATGGCCTGCTCTGCTCGGAATGCCAGCCTCCTGAAGGTTAAGAACAAGGATGTGCTG
Seq A exon
GAATTTATAAAGTACAAGAAGCTACGCTATTTTTGGCTTGCATTGTTGCCCAGAAAAGATCGCACACAATATCCACTAAGTGAGAAGATGTTCCTCTCTGAAGA
Seq C2 exon
GTCTGAAAGAAGCACAGATGACATAGATAAGAAGTACTGCGGATATATAGACAGGGTCAATGTTTATTATACATACTGCACTGATGAGAACAATATCATATGTGAAGAGACAGCCAGCAAGGTGCAGTTGGAAAGTGTGTTGAATGGCCTCCCAGAGGATAGCAGGTAGCTACTCTGAGTTGCTTGTCCCTAGCTGCTCTCCTGCTGTGATGGTTTGAATGAGAATGGCCCCCAAGGGCTCATTTGAATACTTGGTCCTCTGCTGGTGGAACTGTTTCAGAGACACCAGAAGGTGTGACCTTGTTAGAGGAGGTTGTGTCATTGAGAGTGGGCTTTGCGTTTTCAAAAGCCCATGCCATTCCCAGTTAGTTCTCTATCTTGTGCTTGTGGATTGAGCTGTGAGCTCACAGCTACTGCTTAGGACCTTGTCTGCCTGCATGCTGCTATCCTCCTCACCACAATGGTCATGGACTCTAACCCTCCCAAACCAGGAGCCAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000053063_MULTIEX1-4/4=3-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0033515=Tetraspannin=PD(28.1=70.6),PF0139217=Fz=PD(39.6=82.4),PF0005916=Lectin_C=PU(27.3=52.9)
A:
PF0005916=Lectin_C=FE(34.3=100)
C2:
PF0005916=Lectin_C=PD(36.4=63.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGCAAGAGAGTGTCATGGC
R:
GCTACCTGCTATCCTCTGGGA
Band lengths:
243-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types