HsaEX6066862 @ hg38
Exon Skipping
Gene
ENSG00000198353 | HOXC4
Description
homeobox C4 [Source:HGNC Symbol;Acc:HGNC:5126]
Coordinates
chr12:54047769-54054361:+
Coord C1 exon
chr12:54047769-54047917
Coord A exon
chr12:54053160-54053276
Coord C2 exon
chr12:54053917-54054361
Length
117 bp
Sequences
Splice sites
3' ss Seq
CACTTCCTGTCTCTCTTCAGCGG
3' ss Score
10.51
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
Exon sequences
Seq C1 exon
GAAGAGCAGACTCTGGTGCCCTCTCCCAGGCCAGACCCTGAAGCCTCCGATGGCCCCTTCTCCGACTTTCCCGTTTTTGTGGGGTTGAGACGCGCAGTTGCAGTTGAAGGCCGCTCCCCAGATCCCACTGGTGCCACGATTTTGCCAAG
Seq A exon
CGGGGGCTCAACCCCCAGACCTCCAGAAATGACGTCAGAATCATTTGCATCCCGCTGCCTCTACCTGCCTGGTCCAGCTGGGACCCTGCCTCGCCGGCCGCATGGCCAGAGGGTTGG
Seq C2 exon
AAATTAATGATCATGAGCTCGTATTTGATGGACTCTAACTACATCGATCCGAAATTTCCTCCATGCGAAGAATATTCGCAAAATAGCTACATCCCTGAACACAGTCCGGAATATTACGGCCGGACCAGGGAATCGGGATTCCAGCATCACCACCAGGAGCTGTACCCACCACCGCCTCCGCGCCCTAGCTACCCTGAGCGCCAGTATAGCTGCACCAGTCTCCAGGGGCCCGGCAATTCGCGAGGCCACGGGCCGGCCCAGGCGGGCCACCACCACCCCGAGAAATCACAGTCGCTCTGCGAGCCGGCGCCTCTCTCAGGCGCCTCCGCCTCCCCGTCCCCAGCCCCGCCAGCCTGCAGCCAGCCAGCCCCCGACCATCCCTCCAGCGCCGCCAGCAAGCAACCCATAGTCTACCCATGGATGAAAAAAATTCACGTTAGCACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198353-'3-7,'3-3,7-7=AN
Average complexity
A_C3
Mappability confidence:
93%=100=86%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.792
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTTCCCGTTTTTGTGGGGT
R:
CCTGGTGGTGATGCTGGAATC
Band lengths:
242-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains