HsaEX6069939 @ hg38
Exon Skipping
Gene
ENSG00000197653 | DNAH10
Description
dynein axonemal heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr12:123893233-123897967:+
Coord C1 exon
chr12:123893233-123893436
Coord A exon
chr12:123894643-123894723
Coord C2 exon
chr12:123897770-123897967
Length
81 bp
Sequences
Splice sites
3' ss Seq
AATCTCTCTTTCCTTTCAAGGTA
3' ss Score
10.77
5' ss Seq
TAGGTAAGT
5' ss Score
9.66
Exon sequences
Seq C1 exon
GAATTGTACCTGCGCTTTTTTCTGAAGAGGAGAAAGAGTCTATCCTGAGTCAGATTGGACAGGAAGCTCTGAAGCAAGGCATGGGGCCGGCCAAGGAGTCTGTGTGGCAGTACTTCGTGAACAAAAGTGCAAATAACCTGCACATTGTCCTGGGCATGTCGCCAGTGGGGGACACCCTGAGGACCTGGTGCAGAAACTTCCCAG
Seq A exon
GTATGGTAAATAACACTGGTATTGACTGGTTCATGCCCTGGCCTCCCCAAGCCCTCCATGCGGTCGCAAAGTCCTTTCTAG
Seq C2 exon
GGTATAATCCAATGATCCCGGCAGAAAATATAGAAAATGTGGTGAAGCATGTTGTCTTGGTTCACCAATCCGTGGACCACTACAGCCAACAGTTTCTACAGAAATTGAGGCGCAGCAACTATGTCACTCCCAAGAACTACCTTGATTTTATTAACACCTATTCAAAATTGCTGGATGAGAAAACTCAGTGTAATATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197653_CASSETTE8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127802=AAA_8=FE(25.4=100)
A:
PF127802=AAA_8=FE(10.1=100)
C2:
PF127802=AAA_8=PD(21.3=85.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACATTGTCCTGGGCATGTCG
R:
GTTGCTGCGCCTCAATTTCTG
Band lengths:
183-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains