MmuEX0014951 @ mm9
Exon Skipping
Gene
ENSMUSG00000038011 | Dnahc10
Description
dynein, axonemal, heavy chain 10 [Source:MGI Symbol;Acc:MGI:1860299]
Coordinates
chr5:125289025-125292016:+
Coord C1 exon
chr5:125289025-125289228
Coord A exon
chr5:125289584-125289664
Coord C2 exon
chr5:125291819-125292016
Length
81 bp
Sequences
Splice sites
3' ss Seq
CTTTCTCCTTTCTCTCCAAGGCC
3' ss Score
9.16
5' ss Seq
TAGGTAAGC
5' ss Score
8.89
Exon sequences
Seq C1 exon
GAATGGTCCCCGCGCTCTTCGCTGAAGAGGAAAAGGACAACATCCTTGGTCAGATCGGGCAGGAGGCCTTGAAGTTCGGGATGGGTCCAGCCAAGGAGTCTGTGTGGCAGTTTTTTGTGAATAAGAGTGCTAACAACCTACACATCGTCCTGGGCATGTCACCAGTGGGAGACACCTTGAGGACCCGGTGTAGGAATTTCCCAG
Seq A exon
GCCTAGTGAACAACACCGGCATTGATTGGTTCATGCCCTGGCCACCTCAGGCCTTGCATGCAGTGGCCAAGTCGTTTTTAG
Seq C2 exon
GCGATAACTCCATGATTCCCGATGAGAAACTTGAGGAGCTTGTGGAGCACGTGGTCATGGTCCACCAGTCGGTGGGCGAGTTCAGCAAGCAGTTCCAGCAGAAGCTGAGGCGGAGCAACTATGTGACGCCCAAGAACTACCTAGACTTCATTAATACCTACTCAAAACTACTAGATGAGAAAACCCAGTACAACATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038011-'53-56,'53-55,54-56
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127802=AAA_8=FE(25.4=100)
A:
PF127802=AAA_8=FE(10.1=100)
C2:
PF127802=AAA_8=PD(21.3=85.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGAGGACCCGGTGTAGGAA
R:
AGGTAGTTCTTGGGCGTCACA
Band lengths:
171-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: