HsaEX6070622 @ hg19
Exon Skipping
Gene
ENSG00000092054 | MYH7
Description
myosin, heavy chain 7, cardiac muscle, beta [Source:HGNC Symbol;Acc:7577]
Coordinates
chr14:23900627-23901078:-
Coord C1 exon
chr14:23900970-23901078
Coord A exon
chr14:23900794-23900886
Coord C2 exon
chr14:23900627-23900690
Length
93 bp
Sequences
Splice sites
3' ss Seq
CTCCTTCTTGGCCTCTGCAGGGC
3' ss Score
9.76
5' ss Seq
TTCGTGAGT
5' ss Score
7.9
Exon sequences
Seq C1 exon
CGGAGAATCCGGAGCAGGGAAGACAGTCAACACCAAGAGGGTCATCCAGTACTTTGCTGTTATTGCAGCCATTGGGGACCGCAGCAAGAAGGACCAGAGCCCGGGCAAG
Seq A exon
GGCACCCTGGAGGACCAGATCATCCAGGCCAACCCTGCTCTGGAGGCCTTTGGCAATGCCAAGACCGTCCGGAACGACAACTCCTCCCGCTTC
Seq C2 exon
GGGAAATTCATTCGAATTCATTTTGGGGCAACAGGAAAGTTGGCATCTGCAGACATAGAGACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000092054-'7-9,'7-8,8-9=AN
Average complexity
A_S
Mappability confidence:
100%=75=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.108 A=0.097 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.3=100)
A:
PF0006316=Myosin_head=FE(4.4=100)
C2:
PF0006316=Myosin_head=FE(3.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAATCCGGAGCAGGGAAGA
R:
GGTCTCTATGTCTGCAGATGCC
Band lengths:
170-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)