RnoEX6051670 @ rn6
Exon Skipping
Gene
ENSRNOG00000016983 | Myh7
Description
myosin heavy chain 7 [Source:RGD Symbol;Acc:62030]
Coordinates
chr15:33654157-33654615:-
Coord C1 exon
chr15:33654507-33654615
Coord A exon
chr15:33654332-33654424
Coord C2 exon
chr15:33654157-33654220
Length
93 bp
Sequences
Splice sites
3' ss Seq
TCCTTCTTGACCTCTTTCAGGGC
3' ss Score
10.19
5' ss Seq
TTTGTGAGT
5' ss Score
5.91
Exon sequences
Seq C1 exon
CGGAGAATCCGGAGCTGGTAAGACTGTCAACACCAAGAGGGTCATCCAATATTTTGCTGTTATTGCTGCCATTGGGGACCGCAGCAAGAAGGACCAGACCCCAGGCAAG
Seq A exon
GGCACCTTGGAAGATCAAATCATCCAAGCCAACCCCGCTCTGGAGGCCTTTGGCAATGCCAAGACAGTTCGGAATGATAACTCCTCCCGATTT
Seq C2 exon
GGGAAATTCATTCGAATCCATTTTGGAGCAACAGGAAAGTTGGCATCTGCAGATATAGAGACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016983-'7-11,'7-10,8-11=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.108 A=0.097 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.3=100)
A:
PF0006316=Myosin_head=FE(4.4=100)
C2:
PF0006316=Myosin_head=FE(3.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCGGAGCTGGTAAGACTGT
R:
AGGTCTCTATATCTGCAGATGCCA
Band lengths:
167-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]