HsaEX6074182 @ hg38
Exon Skipping
Gene
NA
Description
NA
Coordinates
chr15:42352030-42384552:+
Coord C1 exon
chr15:42352030-42352124
Coord A exon
chr15:42354340-42354453
Coord C2 exon
chr15:42384483-42384552
Length
114 bp
Sequences
Splice sites
3' ss Seq
AATTTTATTCATTTCAACAGGGT
3' ss Score
8.23
5' ss Seq
AATGTAAGT
5' ss Score
8.62
Exon sequences
Seq C1 exon
ATGGTAAAGATCAGCCTGTGGCTTTTACGTATTGTGCCAAAACATCCATCCTGAGCCTGGAGAAGCTCTCACTCAACATTGCCACTGACTGGGAG
Seq A exon
GGTTCCTAAAAAAGCTCTAAAATGAATGCATAGTGTGTCTTTCCTTCAAGATGTAAATGTCAAGGAATGAGTTGGCAAATCAGTTTAAAAACACAAACTACCCAACAGAAAAAT
Seq C2 exon
GAAATTTGCGAGAATCCCCGATTTATCATTGATGGAGCCAACAGAACTGACATCTGTCAAGGAGAGCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000258461-'3-20,'3-6,6-20
Average complexity
C2
Mappability confidence:
0%=0=0%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGTAAAGATCAGCCTGTGG
R:
CTAGCTCTCCTTGACAGATGTC
Band lengths:
165-279
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains