HsaEX6074182 @ hg19
Exon Skipping
Gene
ENSG00000092529 | CAPN3
Description
calpain 3, (p94) [Source:HGNC Symbol;Acc:1480]
Coordinates
chr15:42644228-42676750:+
Coord C1 exon
chr15:42644228-42644322
Coord A exon
chr15:42646538-42646651
Coord C2 exon
chr15:42676681-42676750
Length
114 bp
Sequences
Splice sites
3' ss Seq
AATTTTATTCATTTCAACAGGGT
3' ss Score
8.23
5' ss Seq
AATGTAAGT
5' ss Score
8.62
Exon sequences
Seq C1 exon
ATGGTAAAGATCAGCCTGTGGCTTTTACGTATTGTGCCAAAACATCCATCCTGAGCCTGGAGAAGCTCTCACTCAACATTGCCACTGACTGGGAG
Seq A exon
GGTTCCTAAAAAAGCTCTAAAATGAATGCATAGTGTGTCTTTCCTTCAAGATGTAAATGTCAAGGAATGAGTTGGCAAATCAGTTTAAAAACACAAACTACCCAACAGAAAAAT
Seq C2 exon
GAAATTTGCGAGAATCCCCGATTTATCATTGATGGAGCCAACAGAACTGACATCTGTCAAGGAGAGCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000092529-'3-13,'3-3,4-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. ATG)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.019 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0064816=Peptidase_C2=PU(6.4=75.0)
C2:
PF0064816=Peptidase_C2=FE(11.3=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGTAAAGATCAGCCTGTGG
R:
CTAGCTCTCCTTGACAGATGTC
Band lengths:
165-279
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)