HsaEX6077240 @ hg38
Exon Skipping
Gene
ENSG00000101251 | SEL1L2
Description
SEL1L2 ERAD E3 ligase adaptor subunit [Source:HGNC Symbol;Acc:HGNC:15897]
Coordinates
chr20:13919021-13956131:-
Coord C1 exon
chr20:13956076-13956131
Coord A exon
chr20:13931603-13931771
Coord C2 exon
chr20:13919021-13919123
Length
169 bp
Sequences
Splice sites
3' ss Seq
AACAGTCTTTTTCTTTGTAGGTA
3' ss Score
9.32
5' ss Seq
ATTGTAAGT
5' ss Score
8.54
Exon sequences
Seq C1 exon
CTATCAAAGCAGAGGAACATAATAAAAGACAAAAGGAAAGAAATGTCACCACACAG
Seq A exon
GTATCAGTGAACGAAATCAAACAATATTTATCACACATATTGGAACAAAGAACATCTAGTAATGTAATCAATAAAAGAGAAAATCTCCTGGAGAAAAAGAAGAATCAACGTAAAATAAGAATAAAAGGAATTCAAAATAAAGATATCTTGAAGAGAAATAAGAATCATT
Seq C2 exon
TACAAAAGCAAGCAGAGAAAAATTTTACAGATGAAGGAGACCAGCTATTTAAGATGGGCATCAAGGTTCTCCAGCAGTCTAAAAGCCAAAAACAAAAAGAAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000101251-'6-13,'6-9,8-13=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.726 A=0.140 C2=0.115
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAAAGCAGAGGAACATAATAAAAGA
R:
TTCTTTTTGTTTTTGGCTTTTAGACT
Band lengths:
154-323
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains