MmuEX0041574 @ mm9
Exon Skipping
Gene
ENSMUSG00000074764 | Sel1l2
Description
sel-1 suppressor of lin-12-like 2 (C. elegans) [Source:MGI Symbol;Acc:MGI:2684964]
Coordinates
chr2:140110940-140165893:-
Coord C1 exon
chr2:140165838-140165893
Coord A exon
chr2:140130345-140130513
Coord C2 exon
chr2:140110940-140111042
Length
169 bp
Sequences
Splice sites
3' ss Seq
CTTTTTTTTTTTTTTTGTAGGTA
3' ss Score
11.94
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
Exon sequences
Seq C1 exon
ATACTGAAGCAGAAAGATATAACAGAAAACAAAAAGAAGTGAATGTCACCACACAG
Seq A exon
GTATCAGTGAGCAAAGTCAAGCAATTTTTATTGTATCTACTGGAACAAGGAAACGCAAATAAAATAACCAATAAAAGAGAAAATCCCTTAGAAAAAAAGAAGCATCAACATAAGTTAAAAATAAAAGGAATTCAAAATAAGAATCTCCTGAAGAGAAATCAAAACTACT
Seq C2 exon
TCAAAAACCCAGCCAAGAAAAGTATCACAGATGAAGGAGATGAGTTATTTAAAATGGGCAACAAGATTCTCCAGGAGTCTAAAAGCCAAAAACAAAAAACAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000074764-'1-6,'1-2,2-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.421 A=0.353 C2=0.114
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACAGAAAACAAAAAGAAGTGAATGT
R:
TGTTTTTGGCTTTTAGACTCCTGGA
Band lengths:
130-299
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: