HsaEX6083061 @ hg38
Exon Skipping
Gene
ENSG00000196150 | ZNF250
Description
zinc finger protein 250 [Source:HGNC Symbol;Acc:HGNC:13044]
Coordinates
chr8:144889581-144890403:-
Coord C1 exon
chr8:144890308-144890403
Coord A exon
chr8:144889933-144890074
Coord C2 exon
chr8:144889581-144889694
Length
142 bp
Sequences
Splice sites
3' ss Seq
TTTGGTTTTACCTGCAGCAGCCC
3' ss Score
0.38
5' ss Seq
TGGGTAAGC
5' ss Score
8.84
Exon sequences
Seq C1 exon
CCCCATAGGCTCCTTCAATTTCCGTGATCCTCGGAGTCCCCAGGAGACCAGGTGATGGCAGCAGCCAGACTCCTGCCAGTGCCGGCAGGACCCCAG
Seq A exon
CCCCTGTCGTTCCAGGCCAAGCTGACCTTCGAGGATGTGGCTGTGCTCCTCTCCCAGGATGAATGGGACCGCCTGTGCCCTGCTCAGAGGGGTCTCTACAGAAATGTGATGATGGAAACCTATGGGAATGTAGTCTCATTGG
Seq C2 exon
GACTTCCAGGATCCAAGCCTGACATAATCTCCCAGCTGGAGCGAGGGGAAGATCCCTGGGTCCTGGACAGGAAGGGGGCTAAGAAGAGCCAGGGCCTGTGGAGTGACTACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196150-'9-17,'9-14,11-17
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.154
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=85.4)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCTCCTTCAATTTCCGTGA
R:
GAGTAGTCACTCCACAGGCCC
Band lengths:
202-344
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains