MmuEX6054647 @ mm9
Exon Skipping
Gene
ENSMUSG00000054967 | Zfp647
Description
zinc finger protein 647 [Source:MGI Symbol;Acc:MGI:3052806]
Coordinates
chr15:76747720-76748440:-
Coord C1 exon
chr15:76748399-76748440
Coord A exon
chr15:76748065-76748191
Coord C2 exon
chr15:76747720-76747833
Length
127 bp
Sequences
Splice sites
3' ss Seq
TCAAAATGCTGTCATTCCAGGCC
3' ss Score
5.31
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
Exon sequences
Seq C1 exon
ATGGCAGCAGCCGGGCTTCTACCGCTGCCAGCAGCACCACAG
Seq A exon
GCCAAAGTGACCTTTGAGGATGTGGCTGTTCTGCTGTCTCAGGAGGAGTGGGCCCGCCTGGGCCCTGCTCAGCGGGGCCTCTACCGACACGTCATGATGGAGACCTACGGGAATGTAGTCTCACTGG
Seq C2 exon
GACTTCCAGGATCTAAGCCTGTTGTGATCTCCCAGCTGGAGCGAGGAGAAGACCCGTGGGTCCTGGATGGACAGGGAACCGAGCTGAGCCAGAGCCTGGGAAGTGACCACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000054967-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.667
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCAGCCGGGCTTCTAC
R:
GAGTGGTCACTTCCCAGGCTC
Band lengths:
150-277
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: