HsaEX6083063 @ hg19
Exon Skipping
Gene
ENSG00000170631 | ZNF16
Description
zinc finger protein 16 [Source:HGNC Symbol;Acc:12947]
Coordinates
chr8:146155746-146176274:-
Coord C1 exon
chr8:146176183-146176274
Coord A exon
chr8:146171397-146171601
Coord C2 exon
chr8:146155746-146157976
Length
205 bp
Sequences
Splice sites
3' ss Seq
GTGTTCTTGCCGGTTTTCAGGTC
3' ss Score
10.61
5' ss Seq
CAGGTACTT
5' ss Score
8.17
Exon sequences
Seq C1 exon
AATTCGGGGCGGGACTTCCGGGGGTCAGCCGGCGTTGGCTGAGACGTCTTCGTGCCACGGTGCTGCCTCCTTTCCAAGCGCGACCCGTTGAG
Seq A exon
GTCCTTGTCATGCCCAGCCTCAGAACTCGCCGTGAGGAGGCAGAGATGGAGCTCTCAGTTCCAGGACCATCCCCCTGGACCCCTGCAGCCCAGGCCCGTGTGAGAGATGCTCCTGCTGTGACCCACCCTGGATCTGCAGCCTGTGGTACCCCCTGCTGTAGTGATACTGAGCTGGAAGCCATCTGCCCTCACTATCAGCAGCCAG
Seq C2 exon
ATTGTGACACCAGGACTGAAGACAAGGAGTTTCTTCACAAGGAAGACATTCATGAAGATTTGGAATCACAGGCAGAAATATCAGAAAACTATGCTGGTGATGTTTCCCAGGTACCCGAGCTTGGAGATCTGTGTGATGATGTATCAGAAAGAGACTGGGGAGTCCCCGAAGGCAGGAGGCTGCCACAGTCCCTCTCCCAGGAGGGGGACTTCACACCAGCTGCCATGGGGCTCCTTAGGGGCCCCTTAGGGGAGAAAGATCTGGACTGTAATGGTTTTGACAGTCGCTTCAGTCTGAGCCCAAACCTGATGGCATGTCAGGAAATCCCTACAGAAGAGAGGCCACATCCATATGACATGGGTGGCCAGAGTTTCCAGCACAGTGTGGACCTAACTGGTCATGAGGGGGTTCCCACAGCTGAAAGTCCACTCATATGTAATGAGTGTGGGAAAACCTTCCAAGGAAATCCTGACCTTATTCAGCGTCAAATAGTCCACACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000170631-'0-3,'0-1,2-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.762 C2=0.246
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF134651=zf-H2C2_2=WD(100=3.4),PF134651=zf-H2C2_2=WD(100=3.4),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGCTGCCTCCTTTCCAAG
R:
ACAGTCCAGATCTTTCTCCCCT
Band lengths:
303-508
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)