Special

BtaEX0000586 @ bosTau6

Exon Skipping

Description
NA
Coordinates
chr14:1445334-1459718:-
Coord C1 exon
chr14:1459354-1459718
Coord A exon
chr14:1456590-1456795
Coord C2 exon
chr14:1445334-1447093
Length
206 bp
Sequences
Splice sites
3' ss Seq
GTGTCCTTGCTGGTCTCCAGGTC
3' ss Score
8.92
5' ss Seq
CAGGTACTG
5' ss Score
9.04
Exon sequences
Seq C1 exon
TGCAGGTACCTGTGTATCTAAGTCCCTAGTCCTTCCTGCATTTATAATGGCTTGTTGCACCAACCCTGATCCGCGGGTCTCCCAGGGTTCCCAGCACCTCGCAGAGGCGTGGGGAGGGCTGGTCCCGGGTCAGGAGTGGAGCCGCCGAGTCACTTCTCCTCCCTCAGCCTAGAGCAGCCACATTGGGTAGGGCTGGCGGGTCCGCAAGCCGGAAGTTGAGGCGGGACTTCCGGAGCACCTCGAGGCCGAGCCGCCTGGGTATCTCTTCGTTGCGCTCTTCCCCGAGCCGCTCTAGGCGGCGGCTGTTCGCGCTGTGGCGTCTTCGAGTTGCTGATCGCTCTACCTATGACTCCGATGCACCGGCG
Seq A exon
GTCCCAGCCATGCCCAGCCTCAGAGTATGCTCTAAAGAGGCAGCAGTGGAGCTCTCAGTTCCTGGACCATCCCCTTGGACCCCTAGAGCCCAGGCCTTTGTGGAGTGATGCTCCTGCCGAGACCCACCCTGGATCTGCACTTCATGGTTCCCTCTGTTGTGGTGACGCTGAGCCAGGAGCCACCTCCCCTCACCATCAGCAGCCAG
Seq C2 exon
GCTGGGACACCAGGACTAAGGGCCAGGAGTTTGTTCAGAAGGAAGAAGTTTCTGAGGACTTGGAATCACAGGTAGAAATATCAGACAGCTCTGGCAGTGATGCTCCCCAGACACCTGAGCTTGGAGGACTCCATTGTGGTGTAGAAGAAAGAGACTGCGGGCTCCCTGAGGATGAGAGGCAGATGCACCGCCCTCACCAGGAGGGAGCCTTCACTCTAGCACAGATGCTTCTCAGGAGCCCCTCAGGAGAGAGAGAGGTGGACTGTGATGACATCAAGAGCAGCTGCAGCTGGAGCCCAAGCCCAGTGGAGTGTCAGGGGCCTCCTGCAGAGGGGAGGCCCCATCCACTTGGCATACGGAGCCTGCCCTGCAGCCTGGACCTGCCCAGCTGCACAGGACTTCACGTGGCCGAAAGCCCATTCATATGCAGCGAGTGTGGGAAAACCTTCGAAGGAGACCCCGGTCTTACTCAGCATCAGACAGGGCACACTGGACACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016203_MULTIEX1-3/3=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact

ORF disruption upon sequence exclusion

No structure available
Features
Disorder rate (Iupred):
  C1=NA A=1.000 C2=0.229
Domain overlap (PFAM):

C1:
NA
A:
NO
C2:
PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.1),PF097235=Zn-ribbon_8=WD(100=7.5),PF0009621=zf-C2H2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTGGGTATCTCTTCGTTGC
R:
TGCATCTGCCTCTCATCCTCA
Band lengths:
300-506
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Pre-implantation embryo development