BtaEX0000584 @ bosTau6
Exon Skipping
Description
NA
Coordinates
chr14:1456590-1459718:-
Coord C1 exon
chr14:1459354-1459718
Coord A exon
chr14:1458081-1458335
Coord C2 exon
chr14:1456590-1456795
Length
255 bp
Sequences
Splice sites
3' ss Seq
GTAACTGTGCCCCTGTTCAGAGG
3' ss Score
5.71
5' ss Seq
CAGGTAGTC
5' ss Score
5.3
Exon sequences
Seq C1 exon
TGCAGGTACCTGTGTATCTAAGTCCCTAGTCCTTCCTGCATTTATAATGGCTTGTTGCACCAACCCTGATCCGCGGGTCTCCCAGGGTTCCCAGCACCTCGCAGAGGCGTGGGGAGGGCTGGTCCCGGGTCAGGAGTGGAGCCGCCGAGTCACTTCTCCTCCCTCAGCCTAGAGCAGCCACATTGGGTAGGGCTGGCGGGTCCGCAAGCCGGAAGTTGAGGCGGGACTTCCGGAGCACCTCGAGGCCGAGCCGCCTGGGTATCTCTTCGTTGCGCTCTTCCCCGAGCCGCTCTAGGCGGCGGCTGTTCGCGCTGTGGCGTCTTCGAGTTGCTGATCGCTCTACCTATGACTCCGATGCACCGGCG
Seq A exon
AGGCAGTGATGATAACCTCAAGATTTTAAAATGAACTGAATAAATACTACAAAGGATGGACTCTCCCATGGGGAGAGAGAGAGTGAAGGTTCCCCCTGCTCTGTTCTGTTGCTGCATGGATGAGTGTCTTGAGTCAGTGTTCTCCCTGCTTATGCACCGTCTCTCCAAGCGGCCACGCCAGGTGAATCTTCCTGAGATGTTTCATTAATTCTGCCTCCCAGTGGAGAAATGCGGCTGGTGCCTCACTTTCCTCAG
Seq C2 exon
GTCCCAGCCATGCCCAGCCTCAGAGTATGCTCTAAAGAGGCAGCAGTGGAGCTCTCAGTTCCTGGACCATCCCCTTGGACCCCTAGAGCCCAGGCCTTTGTGGAGTGATGCTCCTGCCGAGACCCACCCTGGATCTGCACTTCATGGTTCCCTCTGTTGTGGTGACGCTGAGCCAGGAGCCACCTCCCCTCACCATCAGCAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016203_MULTIEX1-1/3=C1-3
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA

Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCACTTCTCCTCCCTCAGC
R:
CAAGGGGATGGTCCAGGAACT
Band lengths:
295-550
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development