Special

BtaEX0000585 @ bosTau6

Exon Skipping

Description
NA
Coordinates
chr14:1456590-1459718:-
Coord C1 exon
chr14:1459354-1459718
Coord A exon
chr14:1457690-1457970
Coord C2 exon
chr14:1456590-1456795
Length
281 bp
Sequences
Splice sites
3' ss Seq
GCCTTCTTCTGCCTTTCCAGCCA
3' ss Score
9.15
5' ss Seq
GGGGTCAGT
5' ss Score
3.99
Exon sequences
Seq C1 exon
TGCAGGTACCTGTGTATCTAAGTCCCTAGTCCTTCCTGCATTTATAATGGCTTGTTGCACCAACCCTGATCCGCGGGTCTCCCAGGGTTCCCAGCACCTCGCAGAGGCGTGGGGAGGGCTGGTCCCGGGTCAGGAGTGGAGCCGCCGAGTCACTTCTCCTCCCTCAGCCTAGAGCAGCCACATTGGGTAGGGCTGGCGGGTCCGCAAGCCGGAAGTTGAGGCGGGACTTCCGGAGCACCTCGAGGCCGAGCCGCCTGGGTATCTCTTCGTTGCGCTCTTCCCCGAGCCGCTCTAGGCGGCGGCTGTTCGCGCTGTGGCGTCTTCGAGTTGCTGATCGCTCTACCTATGACTCCGATGCACCGGCG
Seq A exon
CCAGGACCTGGTTGAAATGCCCACCTGCCCCAGGCTCTGCCCCTTCTCTGCTACCTGTGCCCAGCGCACCTGCCCGTCTCACTGATGCGTTTGCTGTTACCTGTCTCCCCACTGAAATCCGTGAGGGTGATGGTCACACTGTCCTCAGAATACCTTGACATGTAGTGGGTGTTTTGGAAACACTGAAAGCATGAGTCCAAGAGGAGAAAGTCAGTCCAAGGGTTGGGAGGCAGCGTCTGCCAACATTTCCTGCTTCGTCTTCATTACTGAAGGACAAAGGG
Seq C2 exon
GTCCCAGCCATGCCCAGCCTCAGAGTATGCTCTAAAGAGGCAGCAGTGGAGCTCTCAGTTCCTGGACCATCCCCTTGGACCCCTAGAGCCCAGGCCTTTGTGGAGTGATGCTCCTGCCGAGACCCACCCTGGATCTGCACTTCATGGTTCCCTCTGTTGTGGTGACGCTGAGCCAGGAGCCACCTCCCCTCACCATCAGCAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016203_MULTIEX1-2/3=C1-3
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact

NA

No structure available
Features
Disorder rate (Iupred):
  C1=NA A=NA C2=1.000
Domain overlap (PFAM):

C1:
NA
A:
NA
C2:
NO


Main Inclusion Isoform:
NA


Main Skipping Isoform:


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCACTTCTCCTCCCTCAGC
R:
CAAGGGGATGGTCCAGGAACT
Band lengths:
295-576
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Pre-implantation embryo development