HsaEX6084586 @ hg38
Exon Skipping
Gene
ENSG00000153802 | TMPRSS11D
Description
transmembrane protease, serine 11D [Source:HGNC Symbol;Acc:HGNC:24059]
Coordinates
chr4:67825732-67833381:-
Coord C1 exon
chr4:67833204-67833381
Coord A exon
chr4:67827261-67827520
Coord C2 exon
chr4:67825732-67825874
Length
260 bp
Sequences
Splice sites
3' ss Seq
ATGTTTTCATAATGTTTTAGCAA
3' ss Score
7.55
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
AATGTGGGGCCGGTCCAGACCTAATAACATTGTCTGAGCAGAGAATCCTTGGAGGCACTGAGGCTGAGGAGGGAAGCTGGCCGTGGCAAGTCAGTCTGCGGCTCAATAATGCCCACCACTGTGGAGGCAGCCTGATCAATAACATGTGGATCCTGACAGCAGCTCACTGCTTCAGAAG
Seq A exon
CAACTCTAATCCTCGTGACTGGATTGCCACGTCTGGTATTTCCACAACATTTCCTAAACTAAGAATGAGAGTAAGAAATATTTTAATTCATAACAATTATAAATCTGCAACTCATGAAAATGACATTGCACTTGTGAGACTTGAGAACAGTGTCACCTTTACCAAAGATATCCATAGTGTGTGTCTCCCAGCTGCTACCCAGAATATTCCACCTGGCTCTACTGCTTATGTAACAGGATGGGGCGCTCAAGAATATGCTG
Seq C2 exon
GCCACACAGTTCCAGAGCTAAGGCAAGGACAGGTCAGAATAATAAGTAATGATGTATGTAATGCACCACATAGTTATAATGGAGCCATCTTGTCTGGAATGCTGTGTGCTGGAGTACCTCAAGGTGGAGTGGACGCATGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000153802_MULTIEX3-3/3=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(19.5=73.3)
A:
PF0008921=Trypsin=FE(38.5=100)
C2:
PF0008921=Trypsin=FE(20.8=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGTCTGAGCAGAGAATCCTTGG
R:
CTGACATGCGTCCACTCCAC
Band lengths:
292-552
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains