HsaEX6087273 @ hg19
Exon Skipping
Gene
ENSG00000151240 | DIP2C
Description
DIP2 disco-interacting protein 2 homolog C (Drosophila) [Source:HGNC Symbol;Acc:29150]
Coordinates
chr10:410902-415573:-
Coord C1 exon
chr10:415434-415573
Coord A exon
chr10:412215-412351
Coord C2 exon
chr10:410902-410961
Length
137 bp
Sequences
Splice sites
3' ss Seq
GCTTTCCTGTTTGCTTTTAGCCA
3' ss Score
8.08
5' ss Seq
GAGGTAGGT
5' ss Score
9.65
Exon sequences
Seq C1 exon
GCCCACGGATGACAGTAACCAGCCCCCGGGCCGGGGTGTCCTCTCCATGCATGGACTGACCTATGGGGTCATTCGTGTGGACTCGGAAGAGAAGCTGTCCGTGCTCACCGTGCAGGATGTCGGCCTCGTGATGCCTGGAG
Seq A exon
CCATCATGTGTTCAGTGAAGCCAGACGGGGTTCCTCAGCTGTGCAGAACGGATGAGATCGGGGAGCTGTGTGTGTGTGCAGTTGCGACGGGCACGTCCTACTATGGCCTCTCTGGCATGACCAAGAACACCTTTGAG
Seq C2 exon
CATACTTCCAACAAGGGCAAATAACATTTTATGAATGAAGAGAGATTACTTTAAAACTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000151240-'22-25,'22-24,23-25=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.240 A=0.011 C2=1.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(20.1=100),PF0022721=Proteasome=PU(28.4=44.7)
A:
PF0050123=AMP-binding=FE(19.7=100),PF0022721=Proteasome=FE(60.8=100)
C2:
PF0050123=AMP-binding=PD(2.2=55.6),PF0022721=Proteasome=PD(8.1=66.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCACGGATGACAGTAACC
R:
AAAATGTTATTTGCCCTTGTTGGA
Band lengths:
170-307
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)