MmuEX6057105 @ mm9
Exon Skipping
Gene
ENSMUSG00000048264 | Dip2c
Description
DIP2 disco-interacting protein 2 homolog C (Drosophila) [Source:MGI Symbol;Acc:MGI:1920179]
Coordinates
chr13:9600632-9605777:+
Coord C1 exon
chr13:9600632-9600742
Coord A exon
chr13:9603735-9603871
Coord C2 exon
chr13:9605569-9605777
Length
137 bp
Sequences
Splice sites
3' ss Seq
TTTTCTTGTTTTGCCTTTAGCCA
3' ss Score
8.06
5' ss Seq
GAGGTAGGT
5' ss Score
9.65
Exon sequences
Seq C1 exon
GACGAGGTGTGCTATCCATGCATGGGCTGACCTATGGTGTGATACGTGTGGATTCAGAGGAGAAGCTGTCCGTGCTCACAGTGCAGGATGTAGGCCTTGTTATGCCTGGAG
Seq A exon
CCATCATGTGTTCAGTGAAGCCAGATGGGATTCCTCAGTTGTGCAGGACGGATGAAATCGGGGAGCTCTGTGTCTGTGCAGTTGCCACAGGAACATCATATTATGGTCTCTCTGGCATGACCAAGAACACCTTTGAG
Seq C2 exon
GTATTTCCCATGACAAGCTCCGGGGCTCCGATCAGTGAATACCCATTCATAAGGACAGGTTTGCTGGGATTTGTTGGTCCTGGGGGCCTCGTCTTTGTTGTGGGTAAGATGGACGGCCTGATGGTAGTCAGTGGAAGAAGACACAATGCAGATGACATTGTGGCCACAGCCTTAGCTGTAGAGCCCATGAAGTTTGTCTACAGAGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000048264-'22-28,'22-27,23-28=AN
Average complexity
A_S
Mappability confidence:
88%=75=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.061 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(7.7=100)
A:
PF0050123=AMP-binding=FE(10.6=100)
C2:
PF0050123=AMP-binding=PD(10.1=61.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGCTGACCTATGGTGTGAT
R:
TGGCCACAATGTCATCTGCAT
Band lengths:
255-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: