HsaEX6087929 @ hg19
Exon Skipping
Gene
ENSG00000107890 | ANKRD26
Description
ankyrin repeat domain 26 [Source:HGNC Symbol;Acc:29186]
Coordinates
chr10:27337730-27349346:-
Coord C1 exon
chr10:27349274-27349346
Coord A exon
chr10:27342249-27342319
Coord C2 exon
chr10:27337730-27337908
Length
71 bp
Sequences
Splice sites
3' ss Seq
AAATATTTGGATTTTTTCAGCTG
3' ss Score
5.88
5' ss Seq
CAGGTATTA
5' ss Score
7.26
Exon sequences
Seq C1 exon
CCTACCATTGAAATGAAAGATTCTGTTCCAAATAAAGCAGGAGGAATGAAGGATGTACAAACATCCAAAGCAG
Seq A exon
CTGAACATGACTTAGAAGTAGCATCAGAAGAAGAGCAAGAAAGGGAAGGGAGTGAAAATAACCAGCCACAG
Seq C2 exon
GTTGAAGAAGAAAGGAAAAAACACAGAAATAATGAAATGGAAGTATCAGCAAACATACATGATGGTGCTACTGATGATGCTGAAGATGATGATGATGATGATGGATTAATTCAAAAAAGAAAGAGTGGAGAAACTGATCATCAGCAATTTCCCAGGAAGGAAAATAAAGAGTATGCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000107890-'22-24,'22-21,23-24=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAGGAGGAATGAAGGATGT
R:
CTGATGATCAGTTTCTCCACTCT
Band lengths:
182-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)