RnoEX0009599 @ rn6
Exon Skipping
Gene
ENSRNOG00000006717 | Ankrd26
Description
ankyrin repeat domain 26 [Source:RGD Symbol;Acc:1310736]
Coordinates
chr4:150583445-150589604:-
Coord C1 exon
chr4:150589526-150589604
Coord A exon
chr4:150585389-150585438
Coord C2 exon
chr4:150583445-150583596
Length
50 bp
Sequences
Splice sites
3' ss Seq
GTGTGTGCATTTGATTGCAGAGC
3' ss Score
7.04
5' ss Seq
AAGGTACGA
5' ss Score
9.78
Exon sequences
Seq C1 exon
CCTGCCGTGGAAAGGAGGGCTCCTGTTCTGAACAAATCAGAGACAGTGGGGATGAAGGATGTGCAGACTTTCAAACCAG
Seq A exon
AGCCAGAAGAGCAGACAAGGCTCAGAGGCAGTGAAGACAGCCAGCAAAAG
Seq C2 exon
GTTGAAGAAAGGAGAAAGTACAGAAATAACGAAGCAGAGCCATCAGGCAATCTGTACGCCGGTGCGGCTGACTGCGCTGCTGACGGAAACCCACCGAGGGGAAACACGGATGACCTGCAGTTTCCCAGGAAGGGGAGTGAGGGACATGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006717-'22-22,'22-21,26-22
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGATGAAGGATGTGCAGAC
R:
AGGTCATCCGTGTTTCCCCTC
Band lengths:
148-198
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]