HsaEX6089019 @ hg38
Exon Skipping
Gene
ENSG00000222047 | C10orf55
Description
chromosome 10 open reading frame 55 [Source:HGNC Symbol;Acc:HGNC:31008]
Coordinates
chr10:73912200-73922777:-
Coord C1 exon
chr10:73922633-73922777
Coord A exon
chr10:73916519-73916641
Coord C2 exon
chr10:73912200-73912284
Length
123 bp
Sequences
Splice sites
3' ss Seq
TTCCCAGTCTCTTCTTACAGCTG
3' ss Score
9.62
5' ss Seq
AGGGTAAGA
5' ss Score
9.21
Exon sequences
Seq C1 exon
AAATGGTGCCAGACGTGGTGGTATGAGCCTGTAATTCCAGCCACTCAGGAGGCTGAGGTGGGAGGATCACTCTGGCCTAGGAGTTTGAGATCAGCCTGGGTGACAGAGCAAGACCCTGTCTCTAGAAAAGAGAAAGAATAAATGG
Seq A exon
CTGATGGAGATGACTCTACTGCAAAAATGACAACCAGCAAGAAAGCGGGTGGTGCCCGTTTCCTCCCTGGGGACCCTCAGAGGGCCAGGCCATTCTCTTCCTTGGTGTGACTGCGGATCCAGG
Seq C2 exon
TTGCACCAGTGAATGTTGGAGAAGTACTTGTTGGACACACATGTTCCTCCATTTAGACAGTCACAGTTCGCTGGAGAGAACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000222047_MULTIEX1-1/3=C1-C2
Average complexity
C3
Mappability confidence:
80%=100=80%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.200
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAATGGTGCCAGACGTGGTG
R:
TGTTCTCTCCAGCGAACTGTG
Band lengths:
227-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains