HsaINT1005547 @ hg38
Intron Retention
Gene
ENSG00000222047 | C10orf55
Description
chromosome 10 open reading frame 55 [Source:HGNC Symbol;Acc:HGNC:31008]
Coordinates
chr10:73912200-73913075:-
Coord C1 exon
chr10:73913043-73913075
Coord A exon
chr10:73912285-73913042
Coord C2 exon
chr10:73912200-73912284
Length
758 bp
Sequences
Splice sites
5' ss Seq
ATGGTACGT
5' ss Score
9.89
3' ss Seq
CTCCGAATTTCTTTGGGCAGTTG
3' ss Score
5.88
Exon sequences
Seq C1 exon
GCCCAGCTGAAGAGCATCAGATCTGTGGGCATG
Seq A exon
GTACGTTTGCTGAAGGACAGTGGCAGAGTTCCAGGGCAGGCAGGGCCGGCCCATGGTGTCAGTGCTGGCCTTTCCTCGGTAAAAGTGACCATTCCCCTCATAGCAGGTTTTTGACTTATCTACAAGGGGACAGGAGGATGAGAGAATATGAGAAAGAGAAGAACATTCCAACTAACTTTTATTTTTTTTTTTTGAGATGGAGTCTTGCTCTGTCGCCCAGTTGGAGTGCAGTGGTGTGATCTCAGCTCACTGAGATCTCTGCCTCCCAGGTTCAAGCAATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGACTACAGGCATCCACTACCATGCCAGGCTGATTTTTGCATTTTTAGTAGAGGCAGGGTTACACCATGTTGTCCAGGCTGGTCTTGAACTCCTGACCTCAAATGATCCACTCACCTTGACCTCTCAAAATGCTGGGATTACAAGCGTGAGCCACCATGCCCGGCTGCCAACGGACATTTTAAAGATGTCGTTTCAGACCTGCCAGAAGACTGGACAGGGTCTCCTTCCAACCCCACCTCACATTTGTGTGGCCACTGTTTCGTGAGCGTGTGTGTGTGTTTATGCTTGTCACATAGGGATGAAGATGTCACCCACCCTACCTCCAGCTCCTAACTCCTGCCTGCTCTTGCCTCCCACCCATCCCTCCCTGTCCCCAAATTTCTCTCCCAGTTGCAGTGGAGATCCCCATACCTATTTCACAGTGCTGCCCTCCGAATTTCTTTGGGCAG
Seq C2 exon
TTGCACCAGTGAATGTTGGAGAAGTACTTGTTGGACACACATGTTCCTCCATTTAGACAGTCACAGTTCGCTGGAGAGAACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000222047:ENST00000409178:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.200
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains