HsaEX6089673 @ hg38
Exon Skipping
Gene
NA
Description
NA
Coordinates
chr10:95867482-95876629:+
Coord C1 exon
chr10:95867482-95867876
Coord A exon
chr10:95870818-95870924
Coord C2 exon
chr10:95876529-95876629
Length
107 bp
Sequences
Splice sites
3' ss Seq
TTTCTTTCCATTTGTATTAGGTC
3' ss Score
9.34
5' ss Seq
GTGGTAAGG
5' ss Score
8.37
Exon sequences
Seq C1 exon
GTTTAATTTAGTGAGAGGGCAGCATTAGTGTGGAGTGGCATGCTTTTGCCCTATCGTGGAATTTACACATCAGAATGTGCAGGATCCAAGTCTGAAAGTGTTGCCACCCGTCACACAACATGGGCTTTGTTTGCTTATTCCATGAAGCAGCAGCTATAGACCTTACCATGGAAACATGAAGAGACCCTGCACCCCTTTCCTTAAGGATTGCTGCAAGAGTTACCTGTTGAGCAGGATTGACTGGTGATGTTTCATTCTGACCTTGTCCCAAGCTCTCCATCTCTAGATCTGGGGACTGACTGTTGAGCTGATGGGGAAAGAAAAGCTCTCACACAAACCGGAAGCCAAATGTCCCCTATCTCTTGAATGATCAAGTCACTTTTGACAACATCCAG
Seq A exon
GTCCTTTACTTTTTATAACAGCCTCAAAGTTTCATGAATTGCTGCAGTAAACATTGATTTTCATGTTTGTGAGTCTGCAAGCCAGCTGGGCAGCTCTACTTCAGGTG
Seq C2 exon
TCAACTGAACCATCTTCTTGGAGTACTCATGAAGATGGAAGTCTACATGGAGAATACAGGATGAATCCACTCTGTCTCCTGCAGTGAAGTCTGTTTGAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000270099-'5-7,'5-6,6-7
Average complexity
C3
Mappability confidence:
0%=0=0%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0115012=GDA1_CD39=PD(7.9=50.0)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAGGATTGACTGGTGATGT
R:
CACTGCAGGAGACAGAGTGGA
Band lengths:
252-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains