HsaEX6089673 @ hg19
Exon Skipping
Gene
ENSG00000138185 | ENTPD1
Description
ectonucleoside triphosphate diphosphohydrolase 1 [Source:HGNC Symbol;Acc:3363]
Coordinates
chr10:97624481-97636740:+
Coord C1 exon
chr10:97624481-97624618
Coord A exon
chr10:97630575-97630681
Coord C2 exon
chr10:97636286-97636740
Length
107 bp
Sequences
Splice sites
3' ss Seq
TTTCTTTCCATTTGTATTAGGTC
3' ss Score
9.34
5' ss Seq
GTGGTAAGG
5' ss Score
8.37
Exon sequences
Seq C1 exon
ATAAAAACATCTTACGCTGGAGTAAAGGAGAAGTACCTGAGTGAATACTGCTTTTCTGGTACCTACATTCTCTCCCTCCTTCTGCAAGGCTATCATTTCACAGCTGATTCCTGGGAGCACATCCATTTCATTGGCAAG
Seq A exon
GTCCTTTACTTTTTATAACAGCCTCAAAGTTTCATGAATTGCTGCAGTAAACATTGATTTTCATGTTTGTGAGTCTGCAAGCCAGCTGGGCAGCTCTACTTCAGGTG
Seq C2 exon
TCAACTGAACCATCTTCTTGGAGTACTCATGAAGATGGAAGTCTACATGGAGAATACAGGATGAATCCACTCTGTCTCCTGCAGTGAAGTCTGTTTGAAGGATGTATTTGGCTGTCTTCTGGACAGGCCATTCTAATAACAGAAACAAACAAGTTATTTTAAAACTTATTGGAATATTCAAATATTAACCAAAGTAGAAAAATATAATACACATCCATGTGCCCATCACAGAACTTCACTGATTATCATCATTTAGCCAGTCTTGAAGAAGCAAGTGCTAATTACAATCACAAATGAAACAAGATTCAGACTTCATGAAGAGCACTGCGCTATAATAAAAGAAGAAATGAGCACATACATTCTTTTACTGACAGTCAAATGGTGAAGGTGGGCAGAATCATTATGTGATGCAACATGGCAAAAGTATACAGACAGTGCATCCAGAGGAAGGCACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000138185-'25-27,'25-26,28-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0115012=GDA1_CD39=FE(10.4=100)
A:
NA
C2:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGCTGGAGTAAAGGAGAAGT
R:
CCAGAAGACAGCCAAATACATCCT
Band lengths:
247-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)