HsaEX6089761 @ hg38
Exon Skipping
Gene
ENSG00000213390 | ARHGAP19
Description
Rho GTPase activating protein 19 [Source:HGNC Symbol;Acc:HGNC:23724]
Coordinates
chr10:97066015-97157889:-
Coord C1 exon
chr10:97157818-97157889
Coord A exon
chr10:97102031-97102084
Coord C2 exon
chr10:97066015-97066086
Length
54 bp
Sequences
Splice sites
3' ss Seq
GGGATCTTGTGTCAATGCAGGTC
3' ss Score
6.17
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GCGACTGAACCGAAACCAGCTGCACATGTTACCGGAACTGCTGTTCCAGAACAACCAGGCTTTGTCAAGACT
Seq A exon
GTCCTGATTCAGTAGGTTCAGGAGGAGCCTGATTCTGCTCGTCCAAGCTGCCAG
Seq C2 exon
GGACTTGAGTGAGAACGCCATCCAGGCCATCCCCAGGAAAGCTTTTCGGGGAGCTACGGACCTTAAAAATTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000213390_MULTIEX3-2/4=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACCGAAACCAGCTGCACAT
R:
TTTAAGGTCCGTAGCTCCCCG
Band lengths:
133-187
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains