HsaINT1042343 @ hg38
Intron Retention
Gene
ENSG00000234855 | SLIT1-AS1
Description
SLIT1 antisense RNA 1 [Source:HGNC Symbol;Acc:HGNC:51198]
Coordinates
chr10:97103320-97103747:+
Coord C1 exon
chr10:97103320-97103491
Coord A exon
chr10:97103492-97103585
Coord C2 exon
chr10:97103586-97103747
Length
94 bp
Sequences
Splice sites
5' ss Seq
TTGGTGAGG
5' ss Score
6.9
3' ss Seq
TCTCTAAACGTTTATTTTAGCAC
3' ss Score
6.2
Exon sequences
Seq C1 exon
CAGGACAGATCAGGACAAAGCCATGCTGGAGTTGGGGCCACACATCTGCTGAAAACCCCCAACACTCTTTTTCCCAGCAGCAGCTTCCAAGCAATTCCTGAGGCCCTCCCACCGGCTAACCAGAAAGGAACCCACCATTGGTCTCCTTAGTAACGACTTCCAAGGCCCCTTG
Seq A exon
GTGAGGATTTTAACAAGCTTCCAGCTCTCTCCCCAAACTGCCTAATTTTTACAACAATCAGACTCCTTTTTTCTTCTCTAAACGTTTATTTTAG
Seq C2 exon
CACATCTGAAAAGCGCACAGTGTGATTTCCAGACCCAAGTTAGACAGCGATTTCTTCAAAGTGCAACGCCCTCAATTAATGAACCCTCTGGGAATGAAGTACCTTCTAACAAAAACATTGTTCAAAATAAAGCTGGAAAAAAACCTCACACAGCCCCTAGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000234855:ENST00000424428:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGAAAACCCCCAACACTC
R:
CGCTGTCTAACTTGGGTCTGG
Band lengths:
175-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains