HsaEX6092275 @ hg38
Exon Skipping
Gene
ENSG00000205744 | DENND1C
Description
DENN domain containing 1C [Source:HGNC Symbol;Acc:HGNC:26225]
Coordinates
chr19:6477074-6477458:-
Coord C1 exon
chr19:6477378-6477458
Coord A exon
chr19:6477218-6477278
Coord C2 exon
chr19:6477074-6477127
Length
61 bp
Sequences
Splice sites
3' ss Seq
GTGCCTCTTCCCCAGGGCAGCGG
3' ss Score
3.34
5' ss Seq
CCGGTGAGC
5' ss Score
8.69
Exon sequences
Seq C1 exon
GTCACCGAGGCAGAGGAACTTCTTCAAAATCTGTTTCAGCAGTCCCTGTCTGGGCCCCAGGCCTCAGTGGGGCTTGAGCTG
Seq A exon
CGGAGTGACGGTCTCCAGCGGGCAGGGTATCCCCCCCCCTACCCGGGGGAATAGCAAGCCG
Seq C2 exon
CTTTCCTGCTTCGTGGCCCCGGACTCCGGCCGCCTGCCATCCATCCCTGAGAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000205744-'10-26,'10-25,11-26
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.418 C2=0.006
Domain overlap (PFAM):
C1:
PF0214116=DENN=FE(12.7=100)
A:
PF0214116=DENN=PD(20.8=72.7)
C2:
PF0214116=DENN=FE(8.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCGAGGCAGAGGAACTTCTT
R:
GTTCTCAGGGATGGATGGCAG
Band lengths:
132-193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains