MmuEX6078699 @ mm9
Exon Skipping
Gene
ENSMUSG00000002668 | Dennd1c
Description
DENN/MADD domain containing 1C [Source:MGI Symbol;Acc:MGI:1918035]
Coordinates
chr17:57213397-57213777:-
Coord C1 exon
chr17:57213697-57213777
Coord A exon
chr17:57213537-57213602
Coord C2 exon
chr17:57213397-57213450
Length
66 bp
Sequences
Splice sites
3' ss Seq
CAGTTACTCTCGTCCCACAGGAC
3' ss Score
9.07
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
GTCGCCGAGGCTGAAGAACTCCTACAAAACCTACAGCAACACCCACTTCTTGGACCCCGGTTTTCAGGAAGATCAGAGATG
Seq A exon
GACAGCAGCATCACTGTCCGGAGTGAATGTGGAATCTTGCCTCCTGCCCTGGGGAATAGCAAGCTG
Seq C2 exon
CTTTCTTGTTTTGTGGCTCCGGATGCCGCCAGCCTGCCATCTATTCCTGAGAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000002668-'7-9,'7-8,8-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0214116=DENN=FE(12.7=100)
A:
PF0214116=DENN=FE(10.3=100)
C2:
PF0214116=DENN=FE(8.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCGCCGAGGCTGAAGAAC
R:
ATTCTCAGGAATAGATGGCAGGC
Band lengths:
135-201
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: