HsaEX6093631 @ hg19
Exon Skipping
Gene
ENSG00000186526 | CYP4F8
Description
cytochrome P450, family 4, subfamily F, polypeptide 8 [Source:HGNC Symbol;Acc:2648]
Coordinates
chr19:15726029-15729197:+
Coord C1 exon
chr19:15726029-15726091
Coord A exon
chr19:15726427-15726625
Coord C2 exon
chr19:15728811-15729197
Length
199 bp
Sequences
Splice sites
3' ss Seq
CCATCCCGTCTGCCCTGCAGGAT
3' ss Score
9.57
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
AGCAAAAACCTCCTGGCAAAGGAGGAGAGGAGGTTGTGCGGGACAACCTTCTCCTGACAGAAG
Seq A exon
GATGTCGCTGCTGAGCCTGTCTTGGCTGGGCCTCAGGCCGGTGGCAGCATCCCCGTGGCTGCTCCTGCTGGTGGTCGGGGCCTCCTGGCTCCTGGCCCGCATCCTGGCCTGGACCTATGCCTTCTATCACAACGGCCGCCGCCTCCGGTGTTTCCCGCAGCCCCGGAAACAGAACTGGTTCTTGGGTCACCTGGGCCTG
Seq C2 exon
GTCACTCCCACAGAGGAGGGCTTGAGGGTCCTGACCCAGCTGGTGGCCACCTACCCCCAGGGCTTTGTGAGGTGGTTGGGCCCCATCACTCCCATCATCAACTTGTGCCACCCTGACATCGTCCGATCTGTCATCAATACCTCAGGTACTCCTGCAGAGCTTGTGGTGGTGGGCACAGGAGAACATTGGAGGGCTTCTAGATCTCATCCCCAAAGCTTCTGTGCAGCTCTTGTAGTACTCAGCCCCTTCCTTCCTGCTTCTCTCTCAGCCACCTTCCTCTTTCCTTCCTGTAGTCACCAACCCCAACCTCAGTGTCTTTTCTCTCTGCTGCCATCTTCCCCACCTCCGTGTTGTTCTGGGAACCACTGGGGCCCCGAGAAGCCTTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000186526-'0-2,'0-0,1-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.034 C2=0.007
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAAAGGAGGAGAGGAGGTT
R:
CCCTCCAATGTTCTCCTGTGC
Band lengths:
242-441
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)