HsaEX6093631 @ hg38
Exon Skipping
Gene
ENSG00000186526 | CYP4F8
Description
cytochrome P450 family 4 subfamily F member 8 [Source:HGNC Symbol;Acc:HGNC:2648]
Coordinates
chr19:15615218-15618144:+
Coord C1 exon
chr19:15615218-15615280
Coord A exon
chr19:15615616-15615814
Coord C2 exon
chr19:15618000-15618144
Length
199 bp
Sequences
Splice sites
3' ss Seq
CCATCCCGTCTGCCCTGCAGGAT
3' ss Score
9.57
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
AGCAAAAACCTCCTGGCAAAGGAGGAGAGGAGGTTGTGCGGGACAACCTTCTCCTGACAGAAG
Seq A exon
GATGTCGCTGCTGAGCCTGTCTTGGCTGGGCCTCAGGCCGGTGGCAGCATCCCCGTGGCTGCTCCTGCTGGTGGTCGGGGCCTCCTGGCTCCTGGCCCGCATCCTGGCCTGGACCTATGCCTTCTATCACAACGGCCGCCGCCTCCGGTGTTTCCCGCAGCCCCGGAAACAGAACTGGTTCTTGGGTCACCTGGGCCTG
Seq C2 exon
GTCACTCCCACAGAGGAGGGCTTGAGGGTCCTGACCCAGCTGGTGGCCACCTACCCCCAGGGCTTTGTGAGGTGGTTGGGCCCCATCACTCCCATCATCAACTTGTGCCACCCTGACATCGTCCGATCTGTCATCAATACCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000186526-'0-2,'0-0,2-2=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.272
Domain overlap (PFAM):
C1:
NO
A:
PF0006717=p450=PU(3.0=21.2)
C2:
PF0006717=p450=FE(10.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAAAAACCTCCTGGCAAAG
R:
GGTATTGATGACAGATCGGACGA
Band lengths:
204-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains