HsaEX6094107 @ hg38
Exon Skipping
Gene
ENSG00000187664 | HAPLN4
Description
hyaluronan and proteoglycan link protein 4 [Source:HGNC Symbol;Acc:HGNC:31357]
Coordinates
chr19:19260813-19262796:-
Coord C1 exon
chr19:19262730-19262796
Coord A exon
chr19:19261446-19261563
Coord C2 exon
chr19:19260813-19261175
Length
118 bp
Sequences
Splice sites
3' ss Seq
GCCCCGTGCCCGCCCCCCAGGTG
3' ss Score
10.57
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
Exon sequences
Seq C1 exon
CCGGGTGTGCGGGGAGCGCAGTCCGGGTGCGTAGGGGCCGCTCGGCGGGGGCCGCGCGGGCAAGATG
Seq A exon
GTGTGCGCTCGGGCGGCCCTCGGTCCCGGCGCGCTCTGGGCCGCGGCCTGGGGCGTCCTGCTGCTCACAGCCCCTGCGGGGGCGCAGCGTGGCCGGAAGAAGGTCGTGCACGTGCTGG
Seq C2 exon
AGGGTGAGTCGGGCTCGGTAGTGGTACAGACAGCGCCTGGGCAGGTGGTAAGCCACCGTGGTGGCACCATCGTCTTGCCCTGCCGCTACCACTATGAGGCAGCCGCCCACGGTCACGACGGCGTCCGGCTCAAGTGGACAAAGGTGGTGGACCCGCTGGCCTTCACCGACGTCTTCGTGGCACTAGGCCCCCAGCACCGGGCATTCGGCAGCTACCGTGGGCGGGCTGAGCTGCAGGGCGACGGGCCTGGGGATGCCTCCCTGGTCCTCCGCAACGTCACGCTGCAAGACTACGGGCGCTATGAGTGCGAAGTCACCAATGAGCTGGAAGATGACGCTGGCATGGTCAAGCTGGACCTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187664-'0-2,'0-1,1-2=AN
Average complexity
A_NA
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.016
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0768612=V-set=PU(97.5=95.1),PF0019312=Xlink=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTCCGGGTGCGTAGGG
R:
GGTGCTGGGGGCCTAGTG
Band lengths:
247-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains