MmuEX0022368 @ mm10
Exon Skipping
Gene
ENSMUSG00000007594 | Hapln4
Description
hyaluronan and proteoglycan link protein 4 [Source:MGI Symbol;Acc:MGI:2679531]
Coordinates
chr8:70083457-70085144:+
Coord C1 exon
chr8:70083457-70083563
Coord A exon
chr8:70084420-70084540
Coord C2 exon
chr8:70084782-70085144
Length
121 bp
Sequences
Splice sites
3' ss Seq
AGCAGCTCCTGTACCCGCAGGCG
3' ss Score
7.02
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
Exon sequences
Seq C1 exon
GCAGACGCCCGGATTGCGCGACCGGCAGGACCAGCTGGCCAGACCGCTGTGCGCGTGCGCAGTTGGGGAAGCGCACTGGCCGCTCAGCAAGGGCCACGACCAGGATG
Seq A exon
GCGTGTGCTCCAGGAGCCCTCGGTCACCGCGCACTCTGGGCCGTGGCCTGGGGACTCCTGCTGCTGGTCCCCGTGCTCGCAGGGGCGCAGCGTGGCAGGAAGAAAGTCGTGCACGTGCTGG
Seq C2 exon
AGGGCGAGTCCGGTTCCGTGGTGGTGCAGACGGCGCCGGGGCAGGTGGTGAGCCACCGCGGTGGTACCATTGTCTTACCCTGCCGTTACCACTACGAGGCGGCCGCCCACGGTCACGACGGCGTCCGCCTCAAGTGGACGAAAGTGGTAGACCCTTTGGCTTTCGCCGATGTCTTCGTGGCTCTGGGTCCCCAGCATCGAGCCTTCGGTCCCTACCGAGGGCGGGCCGAACTGCAGAATGACGGACCTGGGGATGCCTCCCTGGTCCTCCGAAATGTCACCCTTCAGGACTACGGGCGCTACGAGTGCGAGGTCACCAATGAGCTGGAGGATGACGTCGGCATGGTCAAGCTGGATCTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000007594_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.025
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0768612=V-set=PU(98.3=95.1),PF0019312=Xlink=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGACCAGCTGGCCAGA
R:
CGAAAGCCAAAGGGTCTACCA
Band lengths:
247-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types