RnoEX0040926 @ rn6
Exon Skipping
Gene
ENSRNOG00000049949 | Hapln4
Description
hyaluronan and proteoglycan link protein 4 [Source:RGD Symbol;Acc:1308408]
Coordinates
chr16:21087785-21089508:-
Coord C1 exon
chr16:21089418-21089508
Coord A exon
chr16:21088471-21088591
Coord C2 exon
chr16:21087785-21088147
Length
121 bp
Sequences
Splice sites
3' ss Seq
GGCAGCTCCTGTACCCGCAGGCG
3' ss Score
6.82
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
Exon sequences
Seq C1 exon
GCGCGGCCCGCGGGACCAGCTGGCCCGACCGCTGTGCGCGTGCGCAGTCGGGAAGCGCACTGGCCGCTCAGCGGGGGCCACGACCAGGATG
Seq A exon
GCGTGTGCTCCAGGAGCCCTCGGTCACCGCGCACTCTGGGCCGTGGCCTGGGGACTCCTGCTGCTGGTCCCCGTGCTCGCAGGGGCGCAGCGTGGCAGGAAGAAAGTCGTGCACGTGCTGG
Seq C2 exon
AGGGCGAGTCCGGTTCGGTGGTGGTGCAGACGGCGCCGGGGCAGGTGGTGAGCCACCGCGGTGGCACCATTGTCTTACCCTGCCGTTACCACTACGAGGCGGCCGCCCACGGTCACGACGGCGTTCGCCTCAAGTGGACGAAAGTAGTAGACCCTTTGGCTTTCGCCGATGTCTTCGTGGCTCTGGGTCCCCAGCATCGAGCCTTCGGTCCCTACCGAGGGCGGGCCGAGCTACAGAACGATGGACCCGGGGACGCCTCCCTGGTCCTCCGAAATGTCACCCTGCAGGACTACGGGCGCTACGAGTGCGAGGTCACCAATGAGTTGGAGGATGACGCCGGCATGGTAAAGCTGGATCTAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000049949_MULTIEX1-1/3=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.033
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0768612=V-set=WD(100=95.9),PF0019312=Xlink=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTCGGGAAGCGCACTG
R:
GAAGGCTCGATGCTGGGGA
Band lengths:
253-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]