HsaEX6094208 @ hg38
Exon Skipping
Gene
ENSG00000213973 | ZNF99
Description
zinc finger protein 99 [Source:HGNC Symbol;Acc:HGNC:13175]
Coordinates
chr19:22768305-22784107:-
Coord C1 exon
chr19:22784014-22784107
Coord A exon
chr19:22769198-22769324
Coord C2 exon
chr19:22768305-22768400
Length
127 bp
Sequences
Splice sites
3' ss Seq
ATCTTTGTTGTGTTTTTCAGGGA
3' ss Score
11.95
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
Exon sequences
Seq C1 exon
CTGCTCTGTGTCCTTAGCCTCTGTGGCCCTGTGACCTGTAGGTATTTGGAGATCCACAGCTAGGACGCCAGGACCCCCTGGAAGCTTAGAAATG
Seq A exon
GGATCGTTGACATTTTGGGATGTGACCATAGAATTCGCTCTGGAGGAGTGGCAATGCCTGGACATGGCTCAGCAGAATTTATATAGGAATGTTATGTTAGAGAACTACAGAAACCTGGTCTTCCTGG
Seq C2 exon
GTATCGCTGTCTCTAAGCTAGACTTGATAACTTGTCTGAAGCAAGGGAAAGAGCCTTGGAATATGAAGAGACATGAGATGGTAACTAAACCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000213973_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTCTGTGTCCTTAGCCTCT
R:
CTGGGGGTTTAGTTACCATCTCA
Band lengths:
189-316
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains