HsaEX6094708 @ hg19
Exon Skipping
Gene
ENSG00000142065 | ZFP14
Description
zinc finger protein 14 homolog (mouse) [Source:HGNC Symbol;Acc:29312]
Coordinates
chr19:36853014-36870078:-
Coord C1 exon
chr19:36870065-36870078
Coord A exon
chr19:36858786-36858873
Coord C2 exon
chr19:36853014-36853140
Length
88 bp
Sequences
Splice sites
3' ss Seq
GTTTCTTTTTCTTCTTTCAGCTC
3' ss Score
11.32
5' ss Seq
CATGTAAGT
5' ss Score
8.31
Exon sequences
Seq C1 exon
GTCGGCTCCGAGAG
Seq A exon
CTCTGGCTTATCAGGACTCCATAGTTCTCCAACAGAGAAATCTTGAAAAGGACTGACCAGTTTTTGCAGTTCTAAAACCATGGCCCAT
Seq C2 exon
GGTTCAGTGACATTCAGGGATGTGGCCATAGACTTCTCACAGGAAGAATGGGAATTCCTGGATCCTGCTCAGAGGGACTTATATAGGGATGTAATGTGGGAGAACTACAGCAACTTCATTTCACTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000142065-'0-3,'0-1,1-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)