HsaEX6094708 @ hg38
Exon Skipping
Gene
ENSG00000142065 | ZFP14
Description
ZFP14 zinc finger protein [Source:HGNC Symbol;Acc:HGNC:29312]
Coordinates
chr19:36362112-36379199:-
Coord C1 exon
chr19:36379163-36379199
Coord A exon
chr19:36367884-36367971
Coord C2 exon
chr19:36362112-36362238
Length
88 bp
Sequences
Splice sites
3' ss Seq
GTTTCTTTTTCTTCTTTCAGCTC
3' ss Score
11.32
5' ss Seq
CATGTAAGT
5' ss Score
8.31
Exon sequences
Seq C1 exon
TTCTTTCCGGCTTCGCTGCTGGTGTCGGCTCCGAGAG
Seq A exon
CTCTGGCTTATCAGGACTCCATAGTTCTCCAACAGAGAAATCTTGAAAAGGACTGACCAGTTTTTGCAGTTCTAAAACCATGGCCCAT
Seq C2 exon
GGTTCAGTGACATTCAGGGATGTGGCCATAGACTTCTCACAGGAAGAATGGGAATTCCTGGATCCTGCTCAGAGGGACTTATATAGGGATGTAATGTGGGAGAACTACAGCAACTTCATTTCACTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000142065-'0-2,'0-1,3-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTTTCCGGCTTCGCTGC
R:
GAAATGAAGTTGCTGTAGTTCTCCC
Band lengths:
159-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains