HsaEX6094725 @ hg19
Exon Skipping
Gene
ENSG00000198453 | ZNF568
Description
zinc finger protein 568 [Source:HGNC Symbol;Acc:25392]
Coordinates
chr19:37416102-37428144:+
Coord C1 exon
chr19:37416102-37416160
Coord A exon
chr19:37427648-37427774
Coord C2 exon
chr19:37428049-37428144
Length
127 bp
Sequences
Splice sites
3' ss Seq
TTAGCATTATGTTTTTACAGGAA
3' ss Score
7.37
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
Exon sequences
Seq C1 exon
CTTGGTGTTCTCAAGAGTCTGCCCTTTCCGAGGAAGAAGAGGATACAACCAGGCCTCTT
Seq A exon
GAAACAGTGACATTTAAGGATGTGGCTGTTGACCTTACCCAGGAGGAGTGGGAGCAAATGAAACCTGCTCAAAGAAACTTGTATCGAGATGTGATGCTGGAGAACTACAGCAACCTAGTCACAGTGG
Seq C2 exon
GCTGTCAAGTCACCAAACCGGATGTGATATTCAAGTTGGAGCAAGAAGAGGAGCCCTGGGTGATGGAGGAAGAAATGTTTGGGAGGCACTGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198453-'4-6,'4-5,7-6=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.800 A=0.080 C2=0.074
Domain overlap (PFAM):
C1:
PF138721=AAA_34=FE(20.0=100),PF0301610=Exostosin=FE(12.0=100)
A:
PF138721=AAA_34=FE(44.2=100),PF0135222=KRAB=WD(100=95.3),PF0301610=Exostosin=FE(26.6=100)
C2:
PF138721=AAA_34=PD(14.7=42.4),PF0135222=KRAB=PD(0.1=0.0),PF0301610=Exostosin=FE(20.3=100)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGTGTTCTCAAGAGTCTGCC
R:
CTGGACAGTGCCTCCCAAAC
Band lengths:
154-281
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)