HsaEX6096517 @ hg19
Exon Skipping
Gene
ENSG00000142556 | ZNF614
Description
zinc finger protein 614 [Source:HGNC Symbol;Acc:24722]
Coordinates
chr19:52520370-52521747:-
Coord C1 exon
chr19:52521621-52521747
Coord A exon
chr19:52521261-52521356
Coord C2 exon
chr19:52520370-52520612
Length
96 bp
Sequences
Splice sites
3' ss Seq
TTGTCTTTCCTCATGAACAGGGT
3' ss Score
9.11
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
GAATCACTGACCCTGGAGGATGTGGCTGTGGAATTCAGCTGGGAGGAGTGGCAGCTCCTGGACACTGCTCAGAAGAACCTGTACCGGGATGTGATGGTGGAGAACTATAACCACCTAGTATCACTGG
Seq A exon
GGTATCAAACTAGCAAACCAGATGTACTCTCCAAGTTGGCACATGGACAAGAACCATGGACAACAGATGCTAAAATTCAGAATAAAAATTGTCCAG
Seq C2 exon
GAATCGGGAAAGTTGACAGTCATCTGCAAGAGCACTCTCCAAACCAAAGACTTCTGAAGAGCGTGCAGCAATGCAATGGACAGAATACACTTAGAAATATTGTACATCTCAGCAAGACACATTTTCCTATAGTGCAAAATCATGATACATTTGACTTGTACAGAAAAAATTTGAAATCAAGTTTAAGTTTAATCAACCAGAAGAGAAGACATGGAATAAATAACCCTGTTGAGTTTATTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000142556-'2-3,'2-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.424 C2=0.215
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGGAATTCAGCTGGGAGGA
R:
ATTGCTGCACGCTCTTCAGAA
Band lengths:
173-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)