HsaEX6096517 @ hg38
Exon Skipping
Gene
ENSG00000142556 | ZNF614
Description
zinc finger protein 614 [Source:HGNC Symbol;Acc:HGNC:24722]
Coordinates
chr19:52017576-52018494:-
Coord C1 exon
chr19:52018368-52018494
Coord A exon
chr19:52018008-52018103
Coord C2 exon
chr19:52017576-52017697
Length
96 bp
Sequences
Splice sites
3' ss Seq
TTGTCTTTCCTCATGAACAGGGT
3' ss Score
9.11
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
GAATCACTGACCCTGGAGGATGTGGCTGTGGAATTCAGCTGGGAGGAGTGGCAGCTCCTGGACACTGCTCAGAAGAACCTGTACCGGGATGTGATGGTGGAGAACTATAACCACCTAGTATCACTGG
Seq A exon
GGTATCAAACTAGCAAACCAGATGTACTCTCCAAGTTGGCACATGGACAAGAACCATGGACAACAGATGCTAAAATTCAGAATAAAAATTGTCCAG
Seq C2 exon
ACTGAGTCTCGCTCTATCACCCAGGCTGGAGTGCAATGGCCCAATCTCGGCTTGCTGCAACCTCGTCCTCCTGGGATCAAGTGATTCTCCTGCCTCAGCCTCCTGAATAGCTGGGATTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000142556-'10-9,'10-8,11-9
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.400 C2=1.000
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAACCTGTACCGGGATGTGA
R:
CCCAGCTATTCAGGAGGCTGA
Band lengths:
169-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains