RnoEX6024950 @ rn6

Exon Skipping

Gene

ENSRNOG00000046469 | Zfp300

Description

zinc finger protein 300 [Source:RGD Symbol;Acc:2321626]

Coordinates

chrX:908044-911067:+

Coord C1 exon

chrX:908044-908255

Coord A exon

chrX:908482-908574

Coord C2 exon

chrX:909162-911067

Length

93 bp

Sequences

Splice sites

3' ss Seq

TGTATTATTTCCCATTACAGGGT

3' ss Score

8.72

5' ss Seq

CAGGTAAGA

5' ss Score

10.77

Exon sequences

Seq C1 exon

TTAAAGTATTAAATTAAAGATTTACTAATATTTGGAAATCATGTTACTTTTTCAAAACTAATTGAATAAAAGTATACAATTACAGGGATCAGTGTCATTTGAGGATGTATCTGTGGACTTCACTCAGGAAGAATGGAATCAACTGGACCCTGTTCAGAGGAGCCTATACAGAGACGTGATGCTAGAGAATTATAGCCATCTTGTCTCTTTGG

Seq A exon

GGTATCCTATAACCAAACCAGAAGTGATCAGCTCTTTAGAGCAAGGAATCCTTGGGATCATAAAGAAAGAAATCCCAAGTTCAAATTGCACAG

Seq C2 exon

AAGATGGGCAAGCTGAATACAACCTGGCATGGAATCAGAAAAAACAAAATATGCCCCTGGAACAGACTATATCCGTTATTGAGAAAAATGTGACTGAAGAAAGAAGTTATGAATGTGATGGATTTGTAAGCCCACTTTCCCAGAACACATGGGCAATTTCTTCAGGACCGACACCCTATATGAATAACTTATTTGGGGAAAGTATTGAAGATAATTTAGGTTTACTCAATCCTAGTAGTCTGAACTTTGCATCTCAGGAATGTTATGAATGTAATAAATGTAGGAAATTATTAATTCCTGGCAGACATGAGATAAGTGACGGAATGAAGTCCCATGAGTATAATATGTATGGAAAAGAGCATATTTATAACTTTGTTCATCATGACAACTTAACTCAACTTGGAGACAAAGCCTATGACTGTCCTGAGTGTAGAATAACCCTCGGCCCAAGTTCACTCCTTTTCGTTCATCAGATCACTCACATAGGAGAAAAGCCTTAT

VastDB Features

Vast-tools module Information

Secondary ID

ENSRNOG00000046469-'0-2,'0-1,1-2=AN

Average complexity

A_S

Mappability confidence:

100%=100=100%

Protein Impact

Alternative protein isoforms (Ref)

No structure available

Features

Disorder rate (Iupred):

C1=0.000 A=0.000 C2=0.079

Domain overlap (PFAM):

C1:

NO

A:

NO

C2:

PF0009621=zf-C2H2=WD(100=4.0),PF0013017=C1_1=WD(100=11.4),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.4),PF0009621=zf-C2H2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=3.3)

Main Inclusion Isoform:

ENSRNOP00000067586